3DB Atlas for 1LOI
1LOI Hydrolase date May 21, 1996
title N-Terminal Splice Region Of Rat C-Amp Phosphodiesterase, Nmr, 7 Structures
authors K.J.Smith, G.Scotland, J.Beattie, I.P.Trayer, M.D.Houslay
compound source
Molecule: Cyclic 3',5'-Amp Specific Phosphodiesterase Rd1
Chain: Null
Fragment: Residues 1 - 25
Synonym: Rnpde4a1a, Rat Type Iv Cyclic Amp Specific Phosphodiesterase, Isoform Subfamily A, Splice Variant 1;
Engineered: Yes
Synthetic: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Rat
Organ: Brain
methodNMR, 7 Structures
ligand NH2
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] [Save to disk]
  • LPC: Ligand-Protein Contacts for 1LOI
  • CSU: Contacts of Structural Units for 1LOI
  • Likely Quarternary Molecular Structure file(s) for 1LOI
  • NMR restraints (1loi.mr.Z), size 34 Kb
  • Retrieve 1LOI in mmCIF format
  • View 1LOI in 3D
  • MDL's Chemscape Chime (Install Chime freeware) This is good for easiest viewing of basic structure.
  • RasMol (Install RasMol freeware) Here's help on how to use RasMol.
  • Visual 3D analysis of 1LOI
  • STING, shows the sequence and maps the locations of sequence residues or residue ranges onto the 3D structure.
  • Noncovalent Bond Finder displays the closest contacts to ligand or interface, reports distances, walks over water bridges.
  • GRASS (Graphical Representation and Analysis of Structure Server)
  • Structure-derived information
  • scop (Structural Classification of Proteins)
  • Domain Definition for 1loi from 3Dee ( The Database of Protein Domain Definitions )
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily: CATH
  • Summaries and structural analyses of PDB data files: PDBSum
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1loi_]
  • SWISS-PROT database: [CN4Z_RAT]
  • Alignments of the sequence of 1LOI with the sequences similar proteins can be viewed for classification [CN4Z_RAT] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [CN4Z_RAT] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1LOI
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • PDBREPORT (protein verification by WHAT_CHECK procedures)
  • MMDB (Entrez's Structure Database)
  • Still Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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