| Data retrieval |
- Asymmetric unit, PDB entry: [header only] [complete with coordinates] [Save to disk]
- LPC: Ligand-Protein Contacts for 1LOI
- CSU: Contacts of Structural Units for 1LOI
- Likely Quarternary Molecular Structure file(s) for 1LOI
- NMR restraints
(1loi.mr.Z), size 34 Kb
- Retrieve 1LOI in mmCIF format
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| View 1LOI in 3D |
-
MDL's Chemscape Chime
(Install Chime freeware)
This is good for easiest viewing of basic structure.
- RasMol
(Install RasMol freeware)
Here's help on
how to use RasMol.
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| Visual 3D analysis of 1LOI |
- STING,
shows the sequence and maps the locations of sequence residues
or residue ranges onto the 3D structure.
-
Noncovalent Bond Finder
displays the closest contacts to ligand or interface, reports
distances, walks over water bridges.
- GRASS
(Graphical Representation and Analysis of Structure Server)
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| Structure-derived information |
- scop (Structural Classification of Proteins)
- Domain Definition for 1loi from 3Dee ( The Database of Protein Domain Definitions )
- Class (fold), Architecture (subfold), Topology, Homologous superfamily:
CATH
- Summaries and structural analyses of PDB data files:
PDBSum
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| Sequence-derived information |
- View one-letter amino acid or nucleotide sequence for each chain: [1loi_]
- SWISS-PROT database: [CN4Z_RAT]
- Alignments of the sequence of 1LOI with the sequences
similar proteins can be viewed for classification [CN4Z_RAT] at ProtoMap.
Click on "Neighbors List", then on the "See Alignments" button below the list.
- A sequence distance tree ("phylogenetic tree")
can be viewed for 1ACL's classification [CN4Z_RAT] at ProtoMap. Click on the Cluster number.
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| Other resources with information on 1LOI |
- NMR Ensemble (OLDERADO: core, domain and representative structure database)
- PDBREPORT (protein verification by WHAT_CHECK procedures)
- MMDB (Entrez's Structure Database)
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| Still Images |
- Images
from IMB Jena Image Library
of Biological Macromolecules.
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